Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_13175 | Not Available | Positive | 3193420 - 3195531 | 80786.2 |
| glutamine abc transporter substrate-binding protein | DW869_13180 | Not Available | Positive | 3195540 - 3196358 | 30961.2 |
| gfo/idh/moca family oxidoreductase | DW869_13185 | Not Available | Positive | 3196447 - 3197436 | 36847.1 |
| duf4421 domain-containing protein | DW869_13190 | Not Available | Positive | 3197446 - 3198573 | 43106.2 |
| Trna-pro | Not Available | Not Available | Positive | 3198818 - 3198892 | Not Available |
| atp-binding protein | DW869_13200 | Not Available | Negative | 3199052 - 3200383 | 50551.9 |
| sigma-54-dependent fis family transcriptional regulator | DW869_13205 | Not Available | Negative | 3200380 - 3201747 | 51877.1 |
| sel1 repeat family protein | DW869_13210 | Not Available | Positive | 3201971 - 3202894 | 34904.6 |
| tolc family protein | DW869_13215 | Not Available | Positive | 3202944 - 3204413 | 55871.3 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW869_13220 | Not Available | Positive | 3204497 - 3205747 | 48108.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

