Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | DW869_13125 | Not Available | Positive | 3186170 - 3188182 | 72436.4 |
| ribose 5-phosphate isomerase b | DW869_13130 | Not Available | Positive | 3188179 - 3188613 | 15944.1 |
| duf4468 domain-containing protein | DW869_13135 | Not Available | Positive | 3188720 - 3189817 | 40449.4 |
| tetratricopeptide repeat protein | DW869_13140 | Not Available | Positive | 3190182 - 3190478 | 11531.6 |
| 4fe-4s dicluster domain-containing protein | DW869_13145 | Not Available | Positive | 3190489 - 3190719 | 8117.04 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DW869_13150 | Not Available | Positive | 3190731 - 3191813 | 39202.6 |
| hypothetical protein | DW869_13155 | Not Available | Positive | 3191820 - 3191987 | 6434.4 |
| 2-oxoglutarate oxidoreductase | DW869_13160 | Not Available | Positive | 3192006 - 3192770 | 27912.9 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DW869_13165 | Not Available | Positive | 3192784 - 3193326 | 19888.6 |
| hypothetical protein | DW869_13170 | Not Available | Negative | 3193320 - 3193508 | 7558.39 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

