Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | DW869_13025 | Not Available | Negative | 3163301 - 3163837 | 21672.0 |
| duf4476 domain-containing protein | DW869_13030 | Not Available | Positive | 3164145 - 3164816 | 25502.9 |
| duf4476 domain-containing protein | DW869_13035 | Not Available | Positive | 3164850 - 3165461 | 22961.6 |
| hypothetical protein | DW869_13040 | Not Available | Negative | 3165531 - 3165854 | 11453.6 |
| cytidine deaminase | DW869_13045 | Not Available | Positive | 3166073 - 3166552 | 17702.2 |
| winged helix dna-binding domain-containing protein | DW869_13050 | Not Available | Positive | 3166549 - 3167601 | 40541.8 |
| sgnh/gdsl hydrolase family protein | DW869_13055 | Not Available | Negative | 3167668 - 3169179 | 57342.3 |
| abc-f family atpase | DW869_13060 | Not Available | Negative | 3169369 - 3170988 | 61289.0 |
| nucleotide exchange factor grpe | DW869_13065 | Not Available | Positive | 3171166 - 3171786 | 23521.8 |
| molecular chaperone dnaj | DW869_13070 | Not Available | Positive | 3171805 - 3172980 | 42201.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

