Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(+) synthase | DW869_12815 | Not Available | Positive | 3117688 - 3119613 | 71124.6 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DW869_12820 | Not Available | Negative | 3119703 - 3120821 | 42235.8 |
| histidinol-phosphate transaminase | DW869_12825 | Not Available | Negative | 3120825 - 3121865 | 39610.4 |
| histidinol dehydrogenase | DW869_12830 | Not Available | Negative | 3121868 - 3123148 | 46544.2 |
| atp phosphoribosyltransferase | DW869_12835 | Not Available | Negative | 3123198 - 3124049 | 31336.4 |
| paai family thioesterase | DW869_12840 | Not Available | Negative | 3124278 - 3124769 | 18817.8 |
| dabb family protein | DW869_12845 | Not Available | Negative | 3124780 - 3125079 | 11090.4 |
| uridine kinase | DW869_12850 | Not Available | Positive | 3125185 - 3125796 | 23271.3 |
| lytic transglycosylase f | DW869_12855 | Not Available | Positive | 3125793 - 3127172 | 52074.1 |
| hypothetical protein | DW869_12860 | Not Available | Negative | 3127188 - 3127997 | 30908.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

