Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxylating nicotinate-nucleotide diphosphorylase | DW869_12765 | Not Available | Negative | 3110462 - 3111313 | 31272.2 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DW869_12770 | Not Available | Positive | 3111394 - 3111867 | 18355.5 |
| endonuclease | DW869_12775 | Not Available | Negative | 3111944 - 3112954 | 38255.8 |
| aminoacyl-histidine dipeptidase | DW869_12780 | Not Available | Negative | 3112960 - 3114417 | 53134.6 |
| hypothetical protein | DW869_12785 | Not Available | Positive | 3114639 - 3114866 | 8190.17 |
| omph family outer membrane protein | DW869_12790 | Not Available | Positive | 3114889 - 3115503 | 23085.3 |
| thioredoxin | DW869_12795 | Not Available | Positive | 3115622 - 3115918 | 11331.9 |
| thioredoxin | DW869_12800 | Not Available | Positive | 3115922 - 3116380 | 16986.9 |
| nadh peroxidase | DW869_12805 | Not Available | Negative | 3116484 - 3117035 | 20566.4 |
| transcriptional repressor | DW869_12810 | Not Available | Negative | 3117113 - 3117523 | 15560.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

