Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | DW869_12710 | Not Available | Negative | 3097574 - 3097726 | 5511.84 |
| crp/fnr family transcriptional regulator | DW869_12715 | Not Available | Negative | 3097855 - 3098556 | 26605.4 |
| glutamine synthetase type iii | DW869_12720 | Not Available | Negative | 3098718 - 3100907 | 82847.0 |
| hypothetical protein | DW869_12725 | Not Available | Positive | 3101083 - 3103281 | 86146.8 |
| tolc family protein | DW869_12730 | Not Available | Positive | 3103344 - 3104777 | 53866.0 |
| biotin/lipoyl-binding protein | DW869_12735 | Not Available | Positive | 3104795 - 3105790 | 36927.8 |
| abc transporter permease | DW869_12740 | Not Available | Positive | 3105851 - 3107023 | 43632.7 |
| abc transporter permease | DW869_12745 | Not Available | Positive | 3107007 - 3108197 | 44503.8 |
| duf4923 family protein | DW869_12755 | Not Available | Negative | 3109467 - 3110063 | 21522.2 |
| helix-turn-helix domain-containing protein | DW869_12760 | Not Available | Positive | 3110225 - 3110347 | 4640.55 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

