Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_12660 | Not Available | Negative | 3087422 - 3087844 | 16008.7 |
| aminopeptidase p family protein | DW869_12665 | Not Available | Positive | 3087961 - 3089121 | 42418.8 |
| glutamine-hydrolyzing gmp synthase | DW869_12670 | Not Available | Negative | 3089278 - 3090585 | 48297.4 |
| gmp synthase (glutamine-hydrolyzing) | DW869_12675 | Not Available | Negative | 3090624 - 3092177 | 57645.2 |
| large conductance mechanosensitive channel protein mscl | DW869_12680 | Not Available | Negative | 3092416 - 3092856 | 15733.6 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DW869_12685 | Not Available | Positive | 3093008 - 3094018 | 35961.1 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DW869_12690 | Not Available | Positive | 3094140 - 3095063 | 35776.3 |
| yegs/rv2252/bmru family lipid kinase | DW869_12695 | Not Available | Positive | 3095069 - 3095998 | 35331.0 |
| 3-deoxy-8-phosphooctulonate synthase | DW869_12700 | Not Available | Positive | 3096071 - 3096868 | 28835.3 |
| ferritin | DW869_12705 | Not Available | Negative | 3097029 - 3097541 | 19740.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

