Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_12610 | Not Available | Positive | 3073354 - 3073626 | 10520.9 |
| dna-binding response regulator | DW869_12615 | Not Available | Negative | 3073655 - 3074428 | 29809.8 |
| histidine kinase | DW869_12620 | Not Available | Negative | 3074421 - 3075449 | 39021.8 |
| tolc family protein | DW869_12625 | Not Available | Negative | 3075590 - 3076879 | 48530.8 |
| acrb/acrd/acrf family protein | DW869_12630 | Not Available | Negative | 3076866 - 3079925 | 112972.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_12635 | Not Available | Negative | 3079946 - 3080971 | 37886.1 |
| glsb/yeaq/ymge family stress response membrane protein | DW869_12640 | Not Available | Positive | 3081211 - 3081462 | 8688.23 |
| tolc family protein | DW869_12645 | Not Available | Negative | 3081551 - 3083008 | 54833.0 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW869_12650 | Not Available | Negative | 3082986 - 3086135 | 115620.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_12655 | Not Available | Negative | 3086148 - 3087299 | 43816.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

