Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW869_12560 | Not Available | Positive | 3061973 - 3063250 | 46708.2 |
| dna helicase uvrb | DW869_12565 | Not Available | Positive | 3063309 - 3063875 | 21297.7 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | DW869_12570 | Not Available | Positive | 3063904 - 3064605 | 26175.7 |
| duf4836 family protein | DW869_12575 | Not Available | Positive | 3064610 - 3066142 | 56144.9 |
| atp-binding cassette domain-containing protein | DW869_12580 | Not Available | Positive | 3066139 - 3066783 | 24453.5 |
| abc transporter permease | DW869_12585 | Not Available | Positive | 3066780 - 3067982 | 44901.3 |
| yjbq family protein | DW869_12590 | Not Available | Positive | 3067991 - 3068404 | 15533.7 |
| hypothetical protein | DW869_12595 | Not Available | Negative | 3068434 - 3068619 | 7314.11 |
| hypothetical protein | DW869_12600 | Not Available | Positive | 3068806 - 3069411 | 23278.7 |
| aldehyde dehydrogenase family protein | DW869_12605 | Not Available | Positive | 3069782 - 3073102 | 124029.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

