Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna translocase ftsk | DW869_12500 | Not Available | Negative | 3049926 - 3052391 | 91840.0 |
| duf5063 domain-containing protein | DW869_12505 | Not Available | Positive | 3052496 - 3053059 | 21633.7 |
| 3'-5' exonuclease domain-containing protein 2 | DW869_12510 | Not Available | Positive | 3053056 - 3053706 | 24607.5 |
| class i sam-dependent rrna methyltransferase | DW869_12515 | Not Available | Positive | 3053696 - 3054880 | 44449.1 |
| class i sam-dependent methyltransferase | DW869_12520 | Not Available | Negative | 3055532 - 3056320 | 30845.0 |
| autotransporter outer membrane beta-barrel domain-containing protein | DW869_12525 | Not Available | Negative | 3056376 - 3057614 | 47326.1 |
| sigma-70 family rna polymerase sigma factor | DW869_12530 | Not Available | Negative | 3057611 - 3058156 | 20808.2 |
| galactose mutarotase | DW869_12540 | Not Available | Positive | 3058788 - 3059921 | 42006.6 |
| sigma-70 family rna polymerase sigma factor | DW869_12545 | Not Available | Positive | 3060108 - 3060578 | 18011.0 |
| duf5024 domain-containing protein | DW869_12555 | Not Available | Positive | 3061157 - 3061771 | 23018.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

