Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine diphosphokinase | DW869_12450 | Not Available | Positive | 3039068 - 3039703 | 23777.5 |
| 50s ribosomal protein l27 | DW869_12455 | Not Available | Negative | 3039761 - 3040024 | 9251.19 |
| 50s ribosomal protein l21 | DW869_12460 | Not Available | Negative | 3040046 - 3040363 | 11743.4 |
| had family hydrolase | DW869_12465 | Not Available | Negative | 3040577 - 3042646 | 79554.1 |
| nlpc/p60 family protein | DW869_12470 | Not Available | Negative | 3042702 - 3043214 | 19390.5 |
| abc transporter atp-binding protein | DW869_12475 | Not Available | Negative | 3043211 - 3043918 | 26402.7 |
| hypothetical protein | DW869_12480 | Not Available | Negative | 3043931 - 3045418 | 57416.8 |
| insulinase family protein | DW869_12485 | Not Available | Negative | 3045428 - 3048247 | 106234.0 |
| thioredoxin-disulfide reductase | DW869_12490 | Not Available | Negative | 3048278 - 3049225 | 34005.6 |
| hypothetical protein | DW869_12495 | Not Available | Negative | 3049295 - 3049909 | 22975.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

