Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoesterase | DW869_12350 | Not Available | Positive | 3016457 - 3016942 | 19060.4 |
| atp-binding protein | DW869_12355 | Not Available | Negative | 3017416 - 3018585 | 44943.5 |
| duf4065 domain-containing protein | DW869_12360 | Not Available | Positive | 3018774 - 3019364 | 22637.2 |
| duf4065 domain-containing protein | DW869_12365 | Not Available | Negative | 3019612 - 3020169 | 21346.9 |
| hypothetical protein | DW869_12370 | Not Available | Positive | 3020544 - 3021380 | 34157.2 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DW869_12375 | Not Available | Negative | 3022493 - 3023989 | 55275.2 |
| gaf domain-containing protein | DW869_12380 | Not Available | Negative | 3024000 - 3024485 | 18137.7 |
| phosphorylase | DW869_12385 | Not Available | Negative | 3024695 - 3025573 | 32767.5 |
| upf0365 family protein | DW869_12390 | Not Available | Negative | 3025767 - 3026768 | 36124.0 |
| nodulation efficiency protein d (nfed) | DW869_12395 | Not Available | Negative | 3026911 - 3027381 | 17112.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

