Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_12285 | Not Available | Positive | 3000688 - 3002283 | 62545.8 |
| hypothetical protein | DW869_12290 | Not Available | Negative | 3002390 - 3002686 | 11332.5 |
| hypothetical protein | DW869_12300 | Not Available | Negative | 3002810 - 3003055 | 9481.4 |
| arac family transcriptional regulator | DW869_12310 | Not Available | Negative | 3005754 - 3006239 | 19011.1 |
| mfs transporter | DW869_12315 | Not Available | Negative | 3006945 - 3008300 | 49040.2 |
| 4-alpha-glucanotransferase | DW869_12320 | Not Available | Negative | 3008374 - 3011052 | 104498.0 |
| dna topoisomerase (atp-hydrolyzing) subunit b | DW869_12325 | Not Available | Negative | 3011380 - 3013344 | 72969.4 |
| 30s ribosomal protein s20 | DW869_12330 | Not Available | Negative | 3013791 - 3014045 | 9698.07 |
| Trna-glu | Not Available | Not Available | Positive | 3014085 - 3014159 | Not Available |
| dna repair protein reco | DW869_12340 | Not Available | Positive | 3014403 - 3015128 | 28652.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

