Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase | DW869_12235 | Not Available | Positive | 2982888 - 2984747 | 67281.1 |
| hypothetical protein | DW869_12240 | Not Available | Positive | 2984766 - 2985746 | 34914.3 |
| alpha-amylase | DW869_12245 | Not Available | Negative | 2985917 - 2988496 | 97663.8 |
| duf5115 domain-containing protein | DW869_12250 | Not Available | Negative | 2988586 - 2990001 | 51574.4 |
| susf/suse family outer membrane protein | DW869_12255 | Not Available | Negative | 2990025 - 2991161 | 41569.2 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_12260 | Not Available | Negative | 2991190 - 2992884 | 63567.8 |
| tonb-dependent receptor | DW869_12265 | Not Available | Negative | 2992897 - 2995926 | 111498.0 |
| hypothetical protein | DW869_12270 | Not Available | Negative | 2996094 - 2996273 | 7034.63 |
| glycoside hydrolase family 97 protein | DW869_12275 | Not Available | Negative | 2996326 - 2998542 | 84341.1 |
| alpha-amylase | DW869_12280 | Not Available | Negative | 2998584 - 3000434 | 70876.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

