Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW869_12185 | Not Available | Negative | 2968714 - 2971842 | 116518.0 |
| tetratricopeptide repeat protein | DW869_12190 | Not Available | Negative | 2972066 - 2973691 | 63066.8 |
| ribonuclease hii | DW869_12195 | Not Available | Positive | 2973793 - 2974398 | 22930.4 |
| l-fucose:h+ symporter permease | DW869_12200 | Not Available | Negative | 2974541 - 2975854 | 48425.4 |
| l-fucose isomerase | DW869_12205 | Not Available | Negative | 2975967 - 2977742 | 65624.0 |
| gntr family transcriptional regulator | DW869_12210 | Not Available | Negative | 2977764 - 2978744 | 38069.7 |
| hypothetical protein | DW869_12215 | Not Available | Negative | 2978920 - 2979126 | 7450.12 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DW869_12220 | Not Available | Positive | 2979193 - 2980707 | 55852.0 |
| duf3109 family protein | DW869_12225 | Not Available | Positive | 2980810 - 2981391 | 22131.6 |
| hypothetical protein | DW869_12230 | Not Available | Positive | 2981459 - 2982646 | 44408.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

