Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DW869_12085 | Not Available | Positive | 2946639 - 2947709 | 41120.6 |
| hypothetical protein | DW869_12090 | Not Available | Positive | 2947730 - 2947978 | 8752.23 |
| mfs transporter araj | DW869_12095 | Not Available | Positive | 2948171 - 2949352 | 42050.9 |
| hypothetical protein | DW869_12100 | Not Available | Negative | 2949313 - 2949732 | 15775.0 |
| ribosome maturation factor rimp | DW869_12105 | Not Available | Positive | 2949871 - 2950338 | 17915.3 |
| transcription termination/antitermination protein nusa | DW869_12110 | Not Available | Positive | 2950341 - 2951597 | 47697.0 |
| translation initiation factor if-2 | DW869_12115 | Not Available | Positive | 2951639 - 2954650 | 111143.0 |
| cvpa family protein | DW869_12120 | Not Available | Positive | 2954789 - 2955292 | 18078.1 |
| fe-s cluster assembly protein sufb | DW869_12125 | Not Available | Positive | 2955300 - 2956751 | 54039.0 |
| fe-s cluster assembly atpase sufc | DW869_12130 | Not Available | Positive | 2956779 - 2957531 | 27654.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

