Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | DW869_12035 | Not Available | Positive | 2936470 - 2936979 | 20188.3 |
| hypothetical protein | DW869_12040 | Not Available | Positive | 2936969 - 2937448 | 18339.8 |
| duf2807 domain-containing protein | DW869_12045 | Not Available | Negative | 2937646 - 2938377 | 25934.4 |
| m48 family peptidase | DW869_12050 | Not Available | Positive | 2938484 - 2939188 | 27268.4 |
| acetylxylan esterase | DW869_12055 | Not Available | Positive | 2939209 - 2940519 | 49236.1 |
| hypothetical protein | DW869_12060 | Not Available | Positive | 2940624 - 2941274 | 24753.7 |
| hypothetical protein | DW869_12065 | Not Available | Positive | 2941392 - 2941700 | 12243.8 |
| arac family transcriptional regulator | DW869_12070 | Not Available | Positive | 2942309 - 2942809 | 19502.5 |
| hypothetical protein | DW869_12075 | Not Available | Positive | 2942875 - 2945292 | 88341.3 |
| hypothetical protein | DW869_12080 | Not Available | Positive | 2945686 - 2946642 | 36422.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

