Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asnc family transcriptional regulator | DW869_11985 | Not Available | Negative | 2923050 - 2923508 | 17087.9 |
| hypothetical protein | DW869_11990 | Not Available | Negative | 2923625 - 2924008 | 15190.0 |
| hlyc/corc family transporter | DW869_11995 | Not Available | Negative | 2924031 - 2925317 | 48001.9 |
| nudix domain-containing protein | DW869_12000 | Not Available | Positive | 2925452 - 2925976 | 19814.6 |
| tetratricopeptide repeat protein | DW869_12005 | Not Available | Positive | 2925986 - 2928889 | 111213.0 |
| tonb-dependent receptor | DW869_12010 | Not Available | Positive | 2928913 - 2930610 | 64322.7 |
| type i dna topoisomerase | DW869_12015 | Not Available | Positive | 2930732 - 2933170 | 91433.3 |
| shikimate kinase | DW869_12020 | Not Available | Positive | 2933167 - 2933694 | 20453.7 |
| biosynthetic arginine decarboxylase | DW869_12025 | Not Available | Positive | 2933736 - 2935628 | 71492.0 |
| acetylglutamate kinase | DW869_12030 | Not Available | Positive | 2935633 - 2936406 | 27207.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

