Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2156 domain-containing protein | DW869_11880 | Not Available | Negative | 2897550 - 2898452 | 34354.3 |
| lrgb family protein | DW869_11885 | Not Available | Negative | 2898676 - 2899371 | 24440.0 |
| cida/lrga family protein | DW869_11890 | Not Available | Negative | 2899352 - 2899705 | 13036.8 |
| phosphate acetyltransferase | DW869_11895 | Not Available | Positive | 2899908 - 2900921 | 35492.5 |
| acetate kinase | DW869_11900 | Not Available | Positive | 2900947 - 2902143 | 42809.0 |
| udp-2,3-diacylglucosamine diphosphatase | DW869_11905 | Not Available | Negative | 2902209 - 2902976 | 29795.7 |
| duf59 domain-containing protein | DW869_11910 | Not Available | Negative | 2903109 - 2903429 | 11973.4 |
| hypothetical protein | DW869_11915 | Not Available | Negative | 2903939 - 2906839 | 110181.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_11920 | Not Available | Negative | 2906952 - 2908622 | 63120.3 |
| tonb-dependent receptor | DW869_11925 | Not Available | Negative | 2908634 - 2911600 | 110492.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

