Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | DW869_01055 | Not Available | Positive | 268456 - 268758 | 11061.2 |
| beta-galactosidase | DW869_01060 | Not Available | Positive | 268847 - 273127 | 162377.0 |
| transporter | DW869_01065 | Not Available | Positive | 273218 - 274816 | 56704.7 |
| tonb-dependent receptor | DW869_01070 | Not Available | Positive | 275084 - 278203 | 115351.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_01075 | Not Available | Positive | 278225 - 279670 | 54470.2 |
| tonb-dependent receptor | DW869_01080 | Not Available | Positive | 279882 - 282956 | 113204.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_01085 | Not Available | Positive | 282982 - 284481 | 55427.2 |
| duf4981 domain-containing protein | DW869_01090 | Not Available | Positive | 284611 - 287802 | 122098.0 |
| glycoside hydrolase family 2 | DW869_01095 | Not Available | Positive | 287887 - 290727 | 106158.0 |
| dna-binding protein | DW869_01100 | Not Available | Positive | 290875 - 294105 | 121396.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

