Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW869_11830 | Not Available | Negative | 2878204 - 2880228 | 76769.4 |
| tonb-dependent receptor | DW869_11835 | Not Available | Negative | 2880244 - 2883552 | 123715.0 |
| hybrid sensor histidine kinase/response regulator | DW869_11840 | Not Available | Positive | 2883871 - 2887905 | 153285.0 |
| duf3810 domain-containing protein | DW869_11845 | Not Available | Negative | 2888122 - 2889162 | 40960.9 |
| duf2264 domain-containing protein | DW869_11850 | Not Available | Negative | 2889304 - 2891619 | 88823.0 |
| neuraminidase | DW869_11855 | Not Available | Negative | 2891711 - 2892985 | 49248.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DW869_11860 | Not Available | Negative | 2893408 - 2894706 | 48324.2 |
| dihydropteroate synthase | DW869_11865 | Not Available | Positive | 2894825 - 2895682 | 31998.9 |
| tigr00159 family protein | DW869_11870 | Not Available | Positive | 2895714 - 2896478 | 28478.5 |
| gnat family n-acetyltransferase | DW869_11875 | Not Available | Negative | 2896556 - 2897566 | 39082.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

