Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DW869_11780 | Not Available | Negative | 2855585 - 2857933 | 88315.6 |
| alpha-l-arabinofuranosidase | DW869_11785 | Not Available | Negative | 2857950 - 2860448 | 92455.5 |
| glycoside hydrolase | DW869_11790 | Not Available | Negative | 2860476 - 2862422 | 73440.1 |
| tonb-dependent receptor | DW869_11795 | Not Available | Positive | 2863003 - 2866074 | 113325.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_11800 | Not Available | Positive | 2866087 - 2867640 | 58382.6 |
| glycoside hydrolase | DW869_11805 | Not Available | Negative | 2867760 - 2868761 | 37714.2 |
| beta-glucanase | DW869_11810 | Not Available | Negative | 2869086 - 2870228 | 42600.3 |
| beta-xylosidase | DW869_11815 | Not Available | Negative | 2870253 - 2872709 | 93996.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_11820 | Not Available | Negative | 2872994 - 2874685 | 62953.2 |
| tonb-dependent receptor | DW869_11825 | Not Available | Negative | 2874699 - 2877800 | 114541.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

