Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_11730 | Not Available | Negative | 2837193 - 2837645 | 17225.2 |
| atp-dependent exonuclease | DW869_11735 | Not Available | Negative | 2837694 - 2840777 | 116266.0 |
| exonuclease subunit sbcd | DW869_11740 | Not Available | Negative | 2840774 - 2841976 | 44927.8 |
| hypothetical protein | DW869_11745 | Not Available | Positive | 2842148 - 2842423 | 10421.8 |
| addiction module toxin rele | DW869_11750 | Not Available | Positive | 2842413 - 2842754 | 12875.8 |
| glycosyl hydrolase | DW869_11755 | Not Available | Negative | 2842807 - 2845158 | 88886.3 |
| duf5110 domain-containing protein | DW869_11760 | Not Available | Negative | 2845212 - 2847671 | 95170.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_11765 | Not Available | Negative | 2847741 - 2849375 | 62640.4 |
| tonb-dependent receptor | DW869_11770 | Not Available | Negative | 2849397 - 2852345 | 108848.0 |
| helix-turn-helix domain-containing protein | DW869_11775 | Not Available | Negative | 2852557 - 2855397 | 108685.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

