Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family transposase | DW869_11620 | Not Available | Negative | 2816420 - 2817062 | 24645.1 |
| hypothetical protein | DW869_11625 | Not Available | Positive | 2817623 - 2817871 | 9849.92 |
| hypothetical protein | DW869_11630 | Not Available | Positive | 2817901 - 2818488 | 22205.0 |
| transcriptional regulator | DW869_11635 | Not Available | Positive | 2818499 - 2818789 | 10716.1 |
| malate dehydrogenase | DW869_11640 | Not Available | Positive | 2819033 - 2820034 | 36087.5 |
| dna primase | DW869_11645 | Not Available | Positive | 2820112 - 2822187 | 78772.6 |
| gtp cyclohydrolase i fole | DW869_11650 | Not Available | Negative | 2822200 - 2822793 | 22693.7 |
| spor domain-containing protein | DW869_11655 | Not Available | Negative | 2822798 - 2823256 | 17067.7 |
| duf1599 domain-containing protein | DW869_11665 | Not Available | Negative | 2825439 - 2825981 | 20764.0 |
| lysm peptidoglycan-binding domain-containing protein | DW869_11670 | Not Available | Negative | 2826095 - 2826985 | 33332.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

