Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdp-l-fucose synthase | DW869_11360 | Not Available | Negative | 2770551 - 2771633 | 41066.2 |
| gdp-mannose 4,6-dehydratase | DW869_11365 | Not Available | Negative | 2771654 - 2772733 | 40983.1 |
| glycosyltransferase | DW869_11370 | Not Available | Negative | 2772816 - 2773634 | 30951.9 |
| glycosyltransferase family 2 protein | DW869_11375 | Not Available | Negative | 2773663 - 2774568 | 35684.8 |
| putative colanic acid biosynthesis acetyltransferase | DW869_11380 | Not Available | Negative | 2774561 - 2775112 | 20806.2 |
| glycosyltransferase | DW869_11385 | Not Available | Negative | 2775115 - 2776212 | 41967.6 |
| hypothetical protein | DW869_11390 | Not Available | Negative | 2776223 - 2777311 | 42551.6 |
| glycosyltransferase family 1 protein | DW869_11395 | Not Available | Negative | 2777749 - 2778861 | 43154.1 |
| s24 family peptidase | DW869_11405 | Not Available | Negative | 2780509 - 2781165 | 25003.9 |
| hypothetical protein | DW869_11410 | Not Available | Positive | 2781316 - 2781501 | 6944.56 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

