Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| magnesium transporter cora family protein | DW869_01000 | Not Available | Positive | 254666 - 255589 | 35626.5 |
| pepsy domain-containing protein | DW869_01005 | Not Available | Negative | 255683 - 256879 | 45484.8 |
| duf4374 domain-containing protein | DW869_01010 | Not Available | Negative | 256896 - 258296 | 51123.6 |
| tonb-dependent receptor | DW869_01015 | Not Available | Negative | 258354 - 260654 | 86543.3 |
| dna-3-methyladenine glycosylase i | DW869_01020 | Not Available | Positive | 260965 - 261543 | 22222.7 |
| duf3868 domain-containing protein | DW869_01030 | Not Available | Negative | 262382 - 263476 | 40189.0 |
| duf3575 domain-containing protein | DW869_01035 | Not Available | Negative | 263505 - 264071 | 21274.4 |
| site-specific integrase | DW869_01040 | Not Available | Negative | 264167 - 265096 | 35829.4 |
| hypothetical protein | DW869_01045 | Not Available | Positive | 265379 - 267997 | 98599.3 |
| type ii toxin-antitoxin system rele/pare family toxin | DW869_01050 | Not Available | Positive | 268143 - 268484 | 13792.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

