Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enolase | DW869_11310 | Not Available | Negative | 2751805 - 2753100 | 46741.8 |
| glycoside hydrolase family 95 protein | DW869_11315 | Not Available | Positive | 2753266 - 2755710 | 92037.8 |
| glycoside hydrolase family 88 protein | DW869_11320 | Not Available | Positive | 2755759 - 2756958 | 45415.1 |
| duf4038 domain-containing protein | DW869_11325 | Not Available | Positive | 2757109 - 2758578 | 56349.4 |
| alpha-rhamnosidase | DW869_11330 | Not Available | Positive | 2758584 - 2762558 | 149752.0 |
| glycoside hydrolase family 127 protein | DW869_11335 | Not Available | Positive | 2762786 - 2764891 | 78760.8 |
| right-handed parallel beta-helix repeat-containing protein | DW869_11340 | Not Available | Positive | 2764916 - 2766739 | 68577.1 |
| alpha-rhamnosidase | DW869_11345 | Not Available | Positive | 2766754 - 2768898 | 82024.8 |
| hypothetical protein | DW869_11350 | Not Available | Negative | 2769061 - 2769489 | 16939.3 |
| mannose-1-phosphate guanylyltransferase | DW869_11355 | Not Available | Negative | 2769493 - 2770536 | 39471.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

