Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf721 domain-containing protein | DW869_11210 | Not Available | Positive | 2734332 - 2734622 | 11221.9 |
| 5-formyltetrahydrofolate cyclo-ligase | DW869_11215 | Not Available | Negative | 2734788 - 2735318 | 20433.5 |
| s41 family peptidase | DW869_11220 | Not Available | Negative | 2735242 - 2736990 | 64897.7 |
| cmp deaminase | DW869_11225 | Not Available | Negative | 2737005 - 2737439 | 16211.4 |
| duf4847 domain-containing protein | DW869_11230 | Not Available | Negative | 2737444 - 2737938 | 18544.7 |
| m3 family peptidase | DW869_11235 | Not Available | Negative | 2737952 - 2739994 | 77781.2 |
| crp/fnr family transcriptional regulator | DW869_11240 | Not Available | Negative | 2740152 - 2740829 | 26004.6 |
| marc family protein | DW869_11245 | Not Available | Positive | 2741018 - 2741620 | 22140.0 |
| fad:protein fmn transferase | DW869_11250 | Not Available | Negative | 2741779 - 2742795 | 37797.5 |
| manganese efflux pump | DW869_11255 | Not Available | Negative | 2742809 - 2743381 | 21225.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

