Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DW869_11160 | Not Available | Positive | 2727958 - 2728710 | 29446.2 |
| preprotein translocase subunit secg | DW869_11165 | Not Available | Positive | 2728716 - 2729081 | 12571.2 |
| exodeoxyribonuclease iii | DW869_11170 | Not Available | Positive | 2729245 - 2730000 | 29696.0 |
| hypothetical protein | DW869_11175 | Not Available | Positive | 2730155 - 2730448 | 11293.8 |
| pirin family protein | DW869_11180 | Not Available | Negative | 2730671 - 2731375 | 26574.4 |
| Trna-gly | Not Available | Not Available | Positive | 2731512 - 2731587 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2731594 - 2731679 | Not Available |
| 6,7-dimethyl-8-ribityllumazine synthase | DW869_11195 | Not Available | Negative | 2731791 - 2732297 | 18128.7 |
| hypothetical protein | DW869_11200 | Not Available | Negative | 2732390 - 2733067 | 24504.2 |
| dna replication/repair protein recf | DW869_11205 | Not Available | Positive | 2733220 - 2734335 | 42967.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

