Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ndp-sugar synthase | DW869_11110 | Not Available | Positive | 2718132 - 2718842 | 26296.6 |
| hypothetical protein | DW869_11115 | Not Available | Positive | 2718862 - 2719713 | 31806.0 |
| cdp-alcohol phosphatidyltransferase family protein | DW869_11120 | Not Available | Positive | 2719721 - 2720671 | 37209.4 |
| upf0104 family protein | DW869_11125 | Not Available | Positive | 2720668 - 2721669 | 37571.2 |
| had family hydrolase | DW869_11130 | Not Available | Positive | 2721674 - 2722396 | 27108.7 |
| sugar mfs transporter | DW869_11135 | Not Available | Positive | 2722403 - 2723602 | 44345.3 |
| ribokinase | DW869_11140 | Not Available | Negative | 2723656 - 2724552 | 33171.6 |
| inositol-3-phosphate synthase | DW869_11145 | Not Available | Positive | 2724688 - 2725995 | 48823.8 |
| sigma-54-dependent fis family transcriptional regulator | DW869_11150 | Not Available | Positive | 2726162 - 2727427 | 46861.1 |
| hypothetical protein | DW869_11155 | Not Available | Positive | 2727414 - 2727941 | 19738.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

