Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_11055 | Not Available | Negative | 2705711 - 2705920 | 7875.46 |
| hypothetical protein | DW869_11060 | Not Available | Negative | 2706089 - 2706403 | 11444.2 |
| hypothetical protein | DW869_11065 | Not Available | Positive | 2706650 - 2707132 | 18444.0 |
| long-chain fatty acid--coa ligase | DW869_11070 | Not Available | Positive | 2707344 - 2709008 | 62496.0 |
| mfs transporter | DW869_11080 | Not Available | Negative | 2709561 - 2710835 | 47779.5 |
| spoiid/lytb domain-containing protein | DW869_11085 | Not Available | Negative | 2710893 - 2712209 | 49960.9 |
| duf4922 domain-containing protein | DW869_11090 | Not Available | Negative | 2712266 - 2714737 | 94583.3 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DW869_11095 | Not Available | Positive | 2714824 - 2715873 | 39446.9 |
| duf4837 family protein | DW869_11100 | Not Available | Positive | 2715899 - 2716963 | 40590.1 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DW869_11105 | Not Available | Positive | 2716990 - 2718090 | 40647.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

