Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine-type phosphatase | DW869_00945 | Not Available | Positive | 235017 - 236756 | 66792.9 |
| hybrid sensor histidine kinase/response regulator | DW869_00950 | Not Available | Negative | 237004 - 241044 | 153002.0 |
| hypothetical protein | DW869_00955 | Not Available | Positive | 241258 - 242757 | 56184.5 |
| tonb-dependent receptor | DW869_00960 | Not Available | Positive | 242780 - 245818 | 112328.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_00965 | Not Available | Positive | 245836 - 247494 | 63057.9 |
| beta-glycosidase | DW869_00970 | Not Available | Positive | 247611 - 249209 | 59513.4 |
| xylanase | DW869_00975 | Not Available | Positive | 249222 - 250787 | 59590.3 |
| laci family transcriptional regulator | DW869_00980 | Not Available | Negative | 250868 - 251890 | 38256.6 |
| alkyl hydroperoxide reductase subunit f | DW869_00985 | Not Available | Negative | 252030 - 253580 | 56014.5 |
| peroxiredoxin | DW869_00990 | Not Available | Negative | 253593 - 254159 | 21111.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

