Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DW869_10685 | Not Available | Positive | 2633528 - 2634211 | 25699.9 |
| duf4293 family protein | DW869_10690 | Not Available | Negative | 2634295 - 2634747 | 16883.5 |
| rna polymerase rpb6 | DW869_10695 | Not Available | Negative | 2634997 - 2635332 | 12965.3 |
| outer membrane protein assembly factor bamd | DW869_10700 | Not Available | Negative | 2635349 - 2636185 | 32420.3 |
| excinuclease abc subunit uvrb | DW869_10705 | Not Available | Positive | 2636351 - 2638384 | 77715.7 |
| porin | DW869_10710 | Not Available | Negative | 2638551 - 2639564 | 38665.0 |
| yigz family protein | DW869_10715 | Not Available | Negative | 2639755 - 2640357 | 22823.7 |
| exonuclease | DW869_10720 | Not Available | Negative | 2640391 - 2640879 | 18589.9 |
| patatin | DW869_10725 | Not Available | Positive | 2641087 - 2643297 | 81953.5 |
| mannonate dehydratase | DW869_10730 | Not Available | Negative | 2643280 - 2644458 | 44763.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

