Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | DW869_10635 | Not Available | Positive | 2619844 - 2620917 | 41131.5 |
| altronate dehydratase | DW869_10640 | Not Available | Positive | 2620939 - 2622429 | 54186.1 |
| na+/h+ antiporter nhac family protein | DW869_10645 | Not Available | Positive | 2622575 - 2623879 | 46607.5 |
| duf4373 domain-containing protein | DW869_10650 | Not Available | Negative | 2624056 - 2624892 | 32154.2 |
| duf340 domain-containing protein | DW869_10655 | Not Available | Positive | 2625511 - 2625789 | 10143.0 |
| lysine exporter lyso family protein | DW869_10660 | Not Available | Positive | 2625786 - 2626406 | 22330.3 |
| mfs transporter | DW869_10665 | Not Available | Negative | 2626469 - 2628130 | 59851.2 |
| cys-trna(pro) deacylase | DW869_10670 | Not Available | Negative | 2628237 - 2628722 | 17802.8 |
| excinuclease abc subunit uvra | DW869_10675 | Not Available | Negative | 2628737 - 2631565 | 105925.0 |
| lysm peptidoglycan-binding domain-containing protein | DW869_10680 | Not Available | Positive | 2631720 - 2633528 | 68576.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

