Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase | DW869_10585 | Not Available | Positive | 2608398 - 2609153 | 27939.9 |
| hypothetical protein | DW869_10590 | Not Available | Negative | 2609225 - 2609548 | 12222.7 |
| duf4296 domain-containing protein | DW869_10595 | Not Available | Negative | 2609564 - 2610538 | 37267.1 |
| lipoprotein signal peptidase | DW869_10600 | Not Available | Negative | 2610542 - 2611180 | 24149.8 |
| trar/dksa family transcriptional regulator | DW869_10605 | Not Available | Negative | 2611290 - 2611670 | 14347.1 |
| isoleucine--trna ligase | DW869_10610 | Not Available | Negative | 2611694 - 2615182 | 132205.0 |
| arac family transcriptional regulator | DW869_10615 | Not Available | Negative | 2615390 - 2616223 | 32094.1 |
| peptidase | DW869_10620 | Not Available | Negative | 2616722 - 2617540 | 29692.7 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DW869_10625 | Not Available | Negative | 2617794 - 2618468 | 23977.3 |
| sugar kinase | DW869_10630 | Not Available | Negative | 2618578 - 2619600 | 37020.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

