Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW869_10480 | Not Available | Negative | 2576921 - 2580256 | 122693.0 |
| s9 family peptidase | DW869_10485 | Not Available | Negative | 2580786 - 2583029 | 85752.9 |
| glycoside hydrolase family 127 protein | DW869_10490 | Not Available | Negative | 2583041 - 2585446 | 89546.8 |
| glycoside hydrolase | DW869_10495 | Not Available | Negative | 2585517 - 2587919 | 90013.1 |
| glycoside hydrolase family 97 protein | DW869_10500 | Not Available | Negative | 2587956 - 2590679 | 103385.0 |
| duf4859 domain-containing protein | DW869_10505 | Not Available | Negative | 2590990 - 2592000 | 36399.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_10510 | Not Available | Negative | 2592467 - 2594134 | 63385.9 |
| susc/raga family tonb-linked outer membrane protein | DW869_10515 | Not Available | Negative | 2594155 - 2596862 | 101405.0 |
| tagaturonate reductase | DW869_10525 | Not Available | Negative | 2597345 - 2598784 | 53907.1 |
| uronate isomerase | DW869_10530 | Not Available | Positive | 2599110 - 2600516 | 54309.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

