Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DW869_10425 | Not Available | Negative | 2561167 - 2562567 | 52348.7 |
| dihydrolipoyl dehydrogenase | DW869_10430 | Not Available | Negative | 2562567 - 2563907 | 47674.8 |
| hypothetical protein | DW869_10435 | Not Available | Negative | 2563957 - 2564367 | 15494.5 |
| orf6n domain-containing protein | DW869_10440 | Not Available | Negative | 2564443 - 2565003 | 21509.0 |
| l-aspartate oxidase | DW869_10445 | Not Available | Positive | 2565159 - 2566739 | 58967.6 |
| aaa family atpase | DW869_10450 | Not Available | Positive | 2566989 - 2568716 | 68009.9 |
| pectate lyase | DW869_10460 | Not Available | Negative | 2570130 - 2572271 | 81660.3 |
| hypothetical protein | DW869_10465 | Not Available | Positive | 2572255 - 2572509 | 10260.6 |
| hypothetical protein | DW869_10470 | Not Available | Negative | 2572540 - 2574849 | 86346.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_10475 | Not Available | Negative | 2574869 - 2576908 | 76706.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

