Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_10375 | Not Available | Negative | 2547646 - 2550528 | 106088.0 |
| arac family transcriptional regulator | DW869_10380 | Not Available | Negative | 2550586 - 2551083 | 19135.2 |
| hypothetical protein | DW869_10385 | Not Available | Negative | 2551269 - 2551496 | 9095.39 |
| zinc abc transporter substrate-binding protein | DW869_10390 | Not Available | Positive | 2551758 - 2552663 | 34053.5 |
| metal abc transporter atp-binding protein | DW869_10395 | Not Available | Positive | 2552673 - 2553440 | 28695.6 |
| duf2723 domain-containing protein | DW869_10400 | Not Available | Positive | 2553901 - 2557305 | 129138.0 |
| polysaccharide deacetylase family protein | DW869_10405 | Not Available | Positive | 2557376 - 2557987 | 24627.9 |
| duf4861 domain-containing protein | DW869_10410 | Not Available | Negative | 2558045 - 2559217 | 42906.5 |
| gluconate 5-dehydrogenase | DW869_10415 | Not Available | Negative | 2559314 - 2560117 | 28590.5 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW869_10420 | Not Available | Negative | 2560154 - 2560996 | 31850.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

