Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation transporter | DW869_10325 | Not Available | Negative | 2534969 - 2535871 | 32965.4 |
| ribonuclease r | DW869_10330 | Not Available | Positive | 2536002 - 2538149 | 81953.4 |
| serine acetyltransferase | DW869_10335 | Not Available | Positive | 2538450 - 2539358 | 32813.2 |
| type ii toxin-antitoxin system hicb family antitoxin | DW869_10340 | Not Available | Positive | 2539509 - 2539700 | 7387.41 |
| rna methyltransferase | DW869_10345 | Not Available | Positive | 2540212 - 2541660 | 56204.3 |
| s9 family peptidase | DW869_10350 | Not Available | Positive | 2541667 - 2543880 | 83566.4 |
| phosphoribosylamine--glycine ligase | DW869_10355 | Not Available | Positive | 2543896 - 2545164 | 45609.1 |
| hypothetical protein | DW869_10360 | Not Available | Positive | 2545183 - 2546118 | 35926.8 |
| deda family protein | DW869_10365 | Not Available | Positive | 2546094 - 2546561 | 17015.3 |
| sam-dependent methyltransferase | DW869_10370 | Not Available | Positive | 2546566 - 2547249 | 26029.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

