Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_10265 | Not Available | Positive | 2522899 - 2523384 | 18753.0 |
| hypothetical protein | DW869_10270 | Not Available | Positive | 2523564 - 2523806 | 9290.32 |
| thymidylate synthase | DW869_10275 | Not Available | Positive | 2523879 - 2524523 | 24410.4 |
| dna adenine methylase | DW869_10280 | Not Available | Positive | 2524619 - 2525473 | 32826.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_10295 | Not Available | Positive | 2527580 - 2529130 | 58696.9 |
| u32 family peptidase | DW869_10300 | Not Available | Negative | 2529418 - 2530680 | 47014.9 |
| trna dihydrouridine synthase dusb | DW869_10305 | Not Available | Positive | 2530831 - 2531820 | 37212.5 |
| duf2807 domain-containing protein | DW869_10310 | Not Available | Negative | 2531916 - 2532767 | 29091.1 |
| phosphatase pap2 family protein | DW869_10315 | Not Available | Negative | 2532944 - 2533921 | 37786.7 |
| nad(p)-dependent oxidoreductase | DW869_10320 | Not Available | Negative | 2533912 - 2534958 | 40078.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

