Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_09875 | Not Available | Positive | 2444177 - 2444425 | 9270.71 |
| hypothetical protein | DW869_09880 | Not Available | Negative | 2444387 - 2445892 | 57699.1 |
| duf935 family protein | DW869_09885 | Not Available | Negative | 2445931 - 2447283 | 51414.8 |
| duf1320 domain-containing protein | DW869_09890 | Not Available | Negative | 2447296 - 2447721 | 16566.8 |
| hypothetical protein | DW869_09895 | Not Available | Negative | 2447743 - 2449275 | 59112.7 |
| helix-turn-helix domain-containing protein | DW869_09900 | Not Available | Negative | 2449287 - 2449730 | 16567.8 |
| clp protease clpp | DW869_09905 | Not Available | Positive | 2449868 - 2450974 | 41614.1 |
| hypothetical protein | DW869_09910 | Not Available | Positive | 2450982 - 2452181 | 43890.1 |
| lysozyme | DW869_09915 | Not Available | Positive | 2452188 - 2452652 | 17234.4 |
| hypothetical protein | DW869_09920 | Not Available | Positive | 2452668 - 2453057 | 13944.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

