Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW869_09615 | Not Available | Negative | 2385389 - 2387365 | 74933.2 |
| tonb-dependent receptor | DW869_09620 | Not Available | Negative | 2387384 - 2390566 | 118473.0 |
| recombinase | DW869_09625 | Not Available | Positive | 2390855 - 2392036 | 46034.4 |
| tonb-dependent receptor | DW869_09630 | Not Available | Positive | 2392403 - 2395543 | 115565.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_09635 | Not Available | Positive | 2395573 - 2397669 | 78398.8 |
| duf3791 domain-containing protein | DW869_09640 | Not Available | Negative | 2397786 - 2397995 | 8236.12 |
| glycoside hydrolase family 88 protein | DW869_09650 | Not Available | Positive | 2399095 - 2400228 | 43911.2 |
| beta-galactosidase | DW869_09655 | Not Available | Negative | 2400347 - 2402461 | 81018.3 |
| glycoside hydrolase | DW869_09660 | Not Available | Negative | 2402440 - 2404794 | 89317.8 |
| beta-glucuronidase | DW869_09665 | Not Available | Positive | 2405006 - 2407873 | 110052.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

