Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonan lyase | DW869_09560 | Not Available | Negative | 2365182 - 2367008 | 66972.9 |
| glycoside hydrolase family 2 protein | DW869_09565 | Not Available | Negative | 2367133 - 2370138 | 114506.0 |
| glycoside hydrolase family 2 protein | DW869_09570 | Not Available | Negative | 2370344 - 2373199 | 106512.0 |
| duf4976 domain-containing protein | DW869_09575 | Not Available | Negative | 2373213 - 2374607 | 51618.3 |
| oligogalacturonide lyase | DW869_09580 | Not Available | Negative | 2374621 - 2375946 | 49976.5 |
| hypothetical protein | DW869_09585 | Not Available | Negative | 2376899 - 2377567 | 24733.0 |
| duf1565 domain-containing protein | DW869_09590 | Not Available | Negative | 2377564 - 2379117 | 57189.1 |
| hypothetical protein | DW869_09600 | Not Available | Negative | 2379892 - 2380686 | 30395.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_09605 | Not Available | Negative | 2380773 - 2382470 | 64106.2 |
| susc/raga family tonb-linked outer membrane protein | DW869_09610 | Not Available | Negative | 2382499 - 2385348 | 106740.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

