Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_09505 | Not Available | Positive | 2350444 - 2351247 | 30951.4 |
| type vi secretion system needle protein hcp | DW869_09510 | Not Available | Positive | 2351759 - 2352154 | 14749.5 |
| type iv secretion protein rhs | DW869_09515 | Not Available | Positive | 2352265 - 2354022 | 63467.0 |
| hypothetical protein | DW869_09520 | Not Available | Positive | 2354019 - 2355368 | 51499.5 |
| n-acetyltransferase | DW869_09525 | Not Available | Negative | 2355462 - 2355526 | 2629.33 |
| is1380 family transposase is616 | DW869_09530 | Not Available | Positive | 2355569 - 2356915 | 52454.5 |
| hypothetical protein | DW869_09535 | Not Available | Positive | 2357664 - 2357855 | 7652.25 |
| aaa family atpase | DW869_09545 | Not Available | Positive | 2358382 - 2359932 | 60739.3 |
| hypothetical protein | DW869_09550 | Not Available | Negative | 2360070 - 2363369 | 124861.0 |
| rhamnogalacturonan acetylesterase | DW869_09555 | Not Available | Negative | 2363391 - 2364947 | 57980.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

