Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW869_09195 | Not Available | Negative | 2284649 - 2286658 | 75993.3 |
| tonb-dependent receptor | DW869_09200 | Not Available | Negative | 2286679 - 2290134 | 126230.0 |
| sugar phosphate isomerase/epimerase | DW869_09205 | Not Available | Negative | 2290164 - 2291048 | 33237.7 |
| hybrid sensor histidine kinase/response regulator | DW869_09210 | Not Available | Negative | 2291214 - 2295617 | 168817.0 |
| glycoside hydrolase family 2 | DW869_09215 | Not Available | Negative | 2295743 - 2298367 | 98317.5 |
| hypothetical protein | DW869_09220 | Not Available | Positive | 2298442 - 2298666 | 8547.9 |
| abi family protein | DW869_09225 | Not Available | Positive | 2299629 - 2300591 | 37634.4 |
| site-specific integrase | DW869_09230 | Not Available | Positive | 2300839 - 2301969 | 43158.6 |
| hypothetical protein | DW869_09235 | Not Available | Positive | 2302103 - 2302876 | 29289.3 |
| dna-binding protein | DW869_09240 | Not Available | Positive | 2303053 - 2303451 | 15553.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

