Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-processing protein dpra | DW869_08830 | Not Available | Negative | 2196433 - 2197398 | 35652.9 |
| exonuclease vii large subunit | DW869_08835 | Not Available | Negative | 2197419 - 2198945 | 57485.7 |
| type iii restriction endonuclease subunit r | DW869_08845 | Not Available | Negative | 2199605 - 2202337 | 103399.0 |
| site-specific dna-methyltransferase | DW869_08850 | Not Available | Negative | 2202340 - 2204121 | 68299.2 |
| xre family transcriptional regulator | DW869_08855 | Not Available | Negative | 2204128 - 2204334 | 7566.35 |
| hypothetical protein | DW869_08860 | Not Available | Positive | 2204597 - 2205427 | 31025.8 |
| duf3871 family protein | DW869_08865 | Not Available | Positive | 2206159 - 2207205 | 39946.8 |
| hypothetical protein | DW869_08870 | Not Available | Positive | 2207468 - 2207656 | 6881.0 |
| hypothetical protein | DW869_08875 | Not Available | Positive | 2207668 - 2207949 | 10849.9 |
| hypothetical protein | DW869_08880 | Not Available | Positive | 2208055 - 2209662 | 62742.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

