Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| licd family protein | DW869_08775 | Not Available | Negative | 2183857 - 2184654 | 31688.3 |
| nad/nadp octopine/nopaline dehydrogenase | DW869_08780 | Not Available | Negative | 2184658 - 2185758 | 41200.1 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW869_08785 | Not Available | Negative | 2185755 - 2187560 | 70257.3 |
| glycosyl transferase | DW869_08790 | Not Available | Positive | 2187651 - 2188481 | 31878.6 |
| acyltransferase | DW869_08795 | Not Available | Negative | 2188504 - 2189529 | 39516.3 |
| lipopolysaccharide biosynthesis protein | DW869_08800 | Not Available | Negative | 2189529 - 2190965 | 53557.4 |
| methionine--trna ligase | DW869_08805 | Not Available | Negative | 2191047 - 2193089 | 77707.8 |
| hypothetical protein | DW869_08815 | Not Available | Negative | 2194509 - 2194712 | 7435.45 |
| hypothetical protein | DW869_08820 | Not Available | Negative | 2194775 - 2195896 | 43750.9 |
| had family hydrolase | DW869_08825 | Not Available | Negative | 2195915 - 2196412 | 18709.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

