Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secdf | DW869_08625 | Not Available | Positive | 2144634 - 2147621 | 109234.0 |
| sugar kinase | DW869_08630 | Not Available | Negative | 2147885 - 2148949 | 38944.4 |
| nad-dependent epimerase/dehydratase family protein | DW869_08635 | Not Available | Negative | 2149092 - 2150045 | 35269.3 |
| glycine c-acetyltransferase | DW869_08640 | Not Available | Positive | 2150216 - 2151406 | 43568.4 |
| Trna-arg | Not Available | Not Available | Positive | 2151474 - 2151548 | Not Available |
| 2-oxoacid:acceptor oxidoreductase subunit alpha | DW869_08650 | Not Available | Positive | 2151959 - 2153806 | 66247.6 |
| 2-oxoacid:ferredoxin oxidoreductase subunit beta | DW869_08655 | Not Available | Positive | 2153830 - 2154834 | 36538.8 |
| uracil phosphoribosyltransferase | DW869_08660 | Not Available | Negative | 2154991 - 2155650 | 24410.4 |
| phosphoenolpyruvate carboxykinase (atp) | DW869_08665 | Not Available | Positive | 2155911 - 2157518 | 59092.1 |
| proton-conducting membrane transporter | DW869_08670 | Not Available | Positive | 2157624 - 2158274 | 23949.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

