Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quinolinate synthase nada | DW869_08360 | Not Available | Negative | 2068122 - 2069114 | 36606.1 |
| tonb-dependent receptor | DW869_08365 | Not Available | Negative | 2069217 - 2071535 | 88685.1 |
| trmh family rna methyltransferase | DW869_08370 | Not Available | Positive | 2072258 - 2072794 | 19963.2 |
| duf4294 domain-containing protein | DW869_08375 | Not Available | Negative | 2072825 - 2073397 | 22062.0 |
| helix-hairpin-helix domain-containing protein | DW869_08380 | Not Available | Positive | 2073494 - 2075566 | 81198.1 |
| radical sam protein | DW869_08385 | Not Available | Positive | 2075612 - 2076388 | 29335.2 |
| hypothetical protein | DW869_08390 | Not Available | Positive | 2076921 - 2077109 | 6688.22 |
| stas domain-containing protein | DW869_08395 | Not Available | Negative | 2077299 - 2078981 | 60574.7 |
| duf4884 domain-containing protein | DW869_08400 | Not Available | Negative | 2079080 - 2079349 | 10182.1 |
| rubrerythrin family protein | DW869_08405 | Not Available | Positive | 2079530 - 2080108 | 21626.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

