Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna mismatch repair protein muts | DW869_08160 | Not Available | Negative | 2019986 - 2022598 | 97841.4 |
| flavin reductase family protein | DW869_08165 | Not Available | Positive | 2022717 - 2023223 | 19394.2 |
| Trna-gln | Not Available | Not Available | Positive | 2023353 - 2023423 | Not Available |
| peptidase s41 | DW869_08175 | Not Available | Positive | 2023558 - 2026812 | 121961.0 |
| tyrosine--trna ligase | DW869_08180 | Not Available | Negative | 2026937 - 2028229 | 48043.5 |
| hydrolase tatd | DW869_08185 | Not Available | Negative | 2028309 - 2028938 | 24010.2 |
| membrane protein insertion efficiency factor yidd | DW869_08190 | Not Available | Negative | 2028953 - 2029174 | 8364.46 |
| ribonuclease p protein component | DW869_08195 | Not Available | Negative | 2029171 - 2029563 | 15158.8 |
| uroporphyrinogen-iii synthase | DW869_08200 | Not Available | Negative | 2029666 - 2030415 | 28619.6 |
| duf4271 domain-containing protein | DW869_08205 | Not Available | Negative | 2030420 - 2031232 | 31541.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

